|
KMID : 0364820190550040441
|
|
Korean Journal of Microbiology
2019 Volume.55 No. 4 p.441 ~ p.444
|
|
|
The complete genome sequence of Rhodobacteraceae bacterium strain SH-1 isolated from a gut content of whiteleg shrimp Litopenaeus vannamei
|
|
Kim Young-Sam
Kim Kyoung-Ho
|
|
|
Abstract
|
|
|
|
Strain SH-1, a novel bacterium belonging to the family Rhodobacteraceae was isolated from a gut content of a whiteleg shrimp Litopenaeus vannamei collected from Tongyeong, South Korea. The complete genome sequence which is 3,892,138 bp with 66.1% G + C content was obtained using PacBio RS II platform. The genome annotation showed that the complete genome contains total 3,772 genes including 3,649 CDSs, 47 RNAs and 76 pseudogenes. Subsystems related to biosynthetic gene clusters for vitamins, amino acids and colicin V production protein were also predicted. The results may provide insights for understanding the symbiotic relationship between the strain and its host shrimp.
|
|
|
KEYWORD
|
|
|
Litopenaeus vannamei, Rhodobacteraceae, complete genome sequence, whiteleg shrimp
|
|
|
FullTexts / Linksout information
|
|
|
|
|
|
Listed journal information
|
|
|